A test data set for the function mamm_coords_validator
test_data_coordiantesA tibble with 20 rows and 50 columns:
scientific name in binomial form
latitude
longitude
This data set provides a sample from GBIF to test the function mamm_coords_validator
The dataset is based on the "List of the Mammals of Colombia" by: Ramírez-Chaves H E, Leuro Robles N G, Castaño Rivera A, Morales-Martínez D M, Suárez Castro A F, Rodríguez-Posada M E, Zurc D, Concha Osbahr D C, Trujillo A, Noguera Urbano E A, Pantoja Peña G E, González Maya J F, Pérez Torres J, Mantilla Meluk H, López Castañeda C, Velásquez Valencia A, Zárrate Charry D (2024): Mamíferos de Colombia. v1.14. Sociedad Colombiana de Mastozoología. Dataset/Checklist SiB Colombia
For more information about the "mammalcol" package and the data sources, visit the package's GitHub repository: https://github.com/dlizcano/mammalcol
# Load the mammalcol package
library (mammalcol)
# Access the mammalcol_tab dataset
data ("test_data_coordiantes")
# Display the first few rows
head (test_data_coordiantes)
#> gbifID datasetKey
#> 1 4415797342 db01508a-6289-4796-b58c-17a3f154085e
#> 2 4415797340 db01508a-6289-4796-b58c-17a3f154085e
#> 3 4415797336 db01508a-6289-4796-b58c-17a3f154085e
#> 4 3891619324 db01508a-6289-4796-b58c-17a3f154085e
#> 5 3891619313 db01508a-6289-4796-b58c-17a3f154085e
#> 6 3382034331 62b3e751-30d6-420b-8190-fa043d885df7
#> occurrenceID kingdom
#> 1 FH:Boyaca:HMP_AES:Fauna_Fase4:114 Animalia
#> 2 FH:Boyaca:HMP_AES:Fauna_Fase4:117 Animalia
#> 3 FH:Boyaca:HMP_AES:Fauna_Fase4:083 Animalia
#> 4 FH:Boyaca:HMP_AES:Fauna_2022:028 Animalia
#> 5 FH:Boyaca:HMP_AES:Fauna_2022:014 Animalia
#> 6 IAvH:CBB:COLOMBIA:TREMARCTOSORNATUS:MUESTRA:I2D-BIO_2021_039:34 Animalia
#> phylum class order family genus species
#> 1 Chordata Mammalia Carnivora Ursidae Tremarctos Tremarctos ornatus
#> 2 Chordata Mammalia Carnivora Ursidae Tremarctos Tremarctos ornatus
#> 3 Chordata Mammalia Carnivora Ursidae Tremarctos Tremarctos ornatus
#> 4 Chordata Mammalia Carnivora Ursidae Tremarctos Tremarctos ornatus
#> 5 Chordata Mammalia Carnivora Ursidae Tremarctos Tremarctos ornatus
#> 6 Chordata Mammalia Carnivora Ursidae Tremarctos Tremarctos ornatus
#> infraspecificEpithet taxonRank scientificName
#> 1 NA SPECIES Tremarctos ornatus (F.G.Cuvier, 1825)
#> 2 NA SPECIES Tremarctos ornatus (F.G.Cuvier, 1825)
#> 3 NA SPECIES Tremarctos ornatus (F.G.Cuvier, 1825)
#> 4 NA SPECIES Tremarctos ornatus (F.G.Cuvier, 1825)
#> 5 NA SPECIES Tremarctos ornatus (F.G.Cuvier, 1825)
#> 6 NA SPECIES Tremarctos ornatus (F.G.Cuvier, 1825)
#> verbatimScientificName verbatimScientificNameAuthorship countryCode
#> 1 Tremarctos ornatus (F.G.Cuvier, 1825) CO
#> 2 Tremarctos ornatus (F.G.Cuvier, 1825) CO
#> 3 Tremarctos ornatus (F.G.Cuvier, 1825) CO
#> 4 Tremarctos ornatus (F.G.Cuvier, 1825) CO
#> 5 Tremarctos ornatus (F.G.Cuvier, 1825) CO
#> 6 Tremarctos ornatus Cuvier, 1825 CO
#> locality stateProvince
#> 1 Vereda Gúanica Molino Boyacá
#> 2 Vereda Gúanica Molino Boyacá
#> 3 Vereda Gúanica Molino Boyacá
#> 4 Vereda Gúanica Molino Boyacá
#> 5 Vereda Zanja Arriba Boyacá
#> 6 Sendero desamparo Laguna Animas PNN Doña Juana Cascabel Nariño
#> occurrenceStatus individualCount publishingOrgKey
#> 1 PRESENT 1 85aae44a-2a4c-4a3f-92cc-a1a8d27b90fa
#> 2 PRESENT 1 85aae44a-2a4c-4a3f-92cc-a1a8d27b90fa
#> 3 PRESENT 1 85aae44a-2a4c-4a3f-92cc-a1a8d27b90fa
#> 4 PRESENT 1 85aae44a-2a4c-4a3f-92cc-a1a8d27b90fa
#> 5 PRESENT 1 85aae44a-2a4c-4a3f-92cc-a1a8d27b90fa
#> 6 PRESENT NA 2a7e3080-28a9-11dd-97cd-b8a03c50a862
#> decimalLatitude decimalLongitude coordinateUncertaintyInMeters
#> 1 5.113852 -73.32513 NA
#> 2 5.112645 -73.32707 NA
#> 3 5.113852 -73.32513 NA
#> 4 5.113944 -73.32509 NA
#> 5 5.159837 -73.31094 NA
#> 6 1.582500 -76.88140 NA
#> coordinatePrecision elevation elevationAccuracy depth depthAccuracy
#> 1 NA 2320 0 NA NA
#> 2 NA 2370 0 NA NA
#> 3 NA 2320 0 NA NA
#> 4 NA 2310 0 NA NA
#> 5 NA 2390 0 NA NA
#> 6 NA 3311 0 NA NA
#> eventDate day month year taxonKey speciesKey basisOfRecord
#> 1 2023-03-10/2023-05-03 NA NA 2023 2433401 2433401 MACHINE_OBSERVATION
#> 2 2023-02-14/2023-05-03 NA NA 2023 2433401 2433401 MACHINE_OBSERVATION
#> 3 2023-02-14/2023-03-10 NA NA 2023 2433401 2433401 MACHINE_OBSERVATION
#> 4 2022-02-27 27 2 2022 2433401 2433401 MACHINE_OBSERVATION
#> 5 2022-02-10 10 2 2022 2433401 2433401 MACHINE_OBSERVATION
#> 6 2019-09-19 19 9 2019 2433401 2433401 MATERIAL_SAMPLE
#> institutionCode
#> 1 Fundación Humedales (Fund. Humedales)
#> 2 Fundación Humedales (Fund. Humedales)
#> 3 Fundación Humedales (Fund. Humedales)
#> 4 Fundación Humedales (Fund. Humedales)
#> 5 Fundación Humedales (Fund. Humedales)
#> 6 Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH)
#> collectionCode
#> 1
#> 2
#> 3
#> 4
#> 5
#> 6 Colección de Tejidos del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH-CT)
#> catalogNumber recordNumber identifiedBy
#> 1 Juan Camilo Muñoz
#> 2 Juan Camilo Muñoz
#> 3 Juan Camilo Muñoz
#> 4 Juan Camilo Muñoz
#> 5 Juan Camilo Muñoz
#> 6 En proceso de catalogación MNGC001 Mesias Nicodemo Guerrero Cerón
#> dateIdentified license rightsHolder recordedBy
#> 1 2023-05-08T00:00:00 CC_BY_NC_4_0 Juan Camilo Muñoz
#> 2 2023-05-08T00:00:00 CC_BY_NC_4_0 Juan Camilo Muñoz
#> 3 2023-03-13T00:00:00 CC_BY_NC_4_0 Juan Camilo Muñoz
#> 4 2022-05-22T00:00:00 CC_BY_NC_4_0 Juan Camilo Muñoz
#> 5 2022-05-22T00:00:00 CC_BY_NC_4_0 Juan Camilo Muñoz
#> 6 2019-09-19T00:00:00 CC_BY_NC_4_0 Mesias Nicodemo Guerrero Cerón
#> typeStatus establishmentMeans lastInterpreted mediaType
#> 1 NA NA 2024-01-25T01:06:42.265Z
#> 2 NA NA 2024-01-25T01:06:42.247Z
#> 3 NA NA 2024-01-25T01:06:43.123Z
#> 4 NA NA 2024-01-25T01:06:42.614Z
#> 5 NA NA 2024-01-25T01:06:43.207Z
#> 6 NA NA 2024-01-26T10:15:23.806Z
#> issue
#> 1
#> 2
#> 3
#> 4
#> 5
#> 6 MULTIMEDIA_URI_INVALID;INSTITUTION_MATCH_NONE