References

Burnham, K. P., & Anderson, D. R. (2004). Information and likelihood theory: A basis for model selection and inference. In K. P. Burnham & D. R. Anderson (Eds.), Model selection and multimodel inference: A practical information-theoretic approach (pp. 49–97). Retrieved from http://link.springer.com/chapter/10.1007%2F978-0-387-22456-5_2

Fiske, I., & Chandler, R. (2011). unmarked : An R Package for fitting hierarchical models of wildlife occurrence and abundance. Journal of Statistical Software, 43(10), 1–23. doi: 10.18637/jss.v043.i10

Guillera-Arroita, G. (2011). Impact of sampling with replacement in occupancy studies with spatial replication. Methods in Ecology and Evolution, 2(4), 401–406. doi: 10.1111/j.2041-210X.2011.00089.x

Guillera-Arroita, G., & Lahoz-Monfort, J. J. (2012). Designing studies to detect differences in species occupancy: power analysis under imperfect detection. Methods in Ecology and Evolution, 3(5), 860–869. doi: 10.1111/j.2041-210X.2012.00225.x

Guillera-Arroita, G., Lahoz-Monfort, J. J., Elith, J., Gordon, A., Kujala, H., Lentini, P. E., … Wintle, B. A. (2015). Is my species distribution model fit for purpose? Matching data and models to applications. Global Ecology and Biogeography, 24(3), 276–292. doi: 10.1111/geb.12268

Guillera-Arroita, G., Ridout, M., & Morgan, B. (2014). Two-Stage Bayesian Study Design for Species Occupancy Estimation. Journal of Agricultural, Biological, and Environmental Statistics, 1–14. doi: 10.1007/s13253-014-0171-4

Guillera-Arroita, G., Ridout, M. S., & Morgan, B. J. T. (2010). Design of occupancy studies with imperfect detection. Methods in Ecology and Evolution, 1(2), 131–139. doi: 10.1111/j.2041-210X.2010.00017.x

Kéry, M. (2008). Estimating abundance from bird counts: binomial mixture models uncover complex covariate relationships. The Auk, 125(2), 336–345. doi: 10.1525/auk.2008.06185

Kéry, M. (2010). Introduction to WinBUGS for ecologists. doi: 10.1016/B978-0-12-378605-0.00020-X

Kéry, M., Guillera-Arroita, G., & Lahoz-Monfort, J. J. (2013). Analysing and mapping species range dynamics using occupancy models. Journal of Biogeography, 40(8), 1463–1474. doi: 10.1111/jbi.12087

Kéry, M., & Royle, J. A. (2008). Hierarchical Bayes estimation of species richness and occupancy in spatially replicated surveys. Journal of Applied Ecology, 45(2), 589–598. doi: 10.1111/j.1365-2664.2007.01441.x

Kéry, M., & Royle, J. A. (2015). Applied hierarchical modeling in ecology: Analysis of distribution, abundance and species richness in r and bugs: Volume 1: Prelude and static models. Academic Press.

Kéry, M., & Schaub, M. (2012). Estimation of Occupancy and Species Distributions from Detection/Nondetection Data in Metapopulation Designs Using Site-Occupancy Models. In Bayesian population analysis using winbugs (pp. 413–461). doi: 10.1016/B978-0-12-387020-9.00013-4

MacKenzie, D. I., Nichols, J. D., Hines, J. E., Knutson, M. G., & Franklin, A. B. (2003). Estimating site occupancy, colonization, and local extinction when a species is detected imperfectly. Ecology, 84(8), 2200–2207. doi: 10.1890/02-3090

MacKenzie, D. I., Nichols, J. D., Lachman, G. B., Droege, S., Andrew Royle, J., & Langtimm, C. A. (2002). Estimating site occupancy rates when detection probabilities are less than one. Ecology, 83(8), 2248–2255. doi: 10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2

MacKenzie, D. I., Nichols, J., Royle, J. A., Pollock, K., Bailey, L., & Hines, J. (2006). Occupancy estimation and modeling: inferring patterns and dynamics of species occurrence (p. 324). Burlington, MA: Academic Press.

MacKenzie, D. I., & Royle, J. A. (2005). Designing occupancy studies: general advice and allocating survey effort. Journal of Applied Ecology, 42(6), 1105–1114. doi: 10.1111/j.1365-2664.2005.01098.x

R Core Team. (2016). R: A language and environment for statistical computing. Retrieved from http://www.r-project.org/

Royle, J. A. (2006). Site occupancy models with heterogeneous detection probabilities. Biometrics, 62(1), 97–102. doi: 10.1111/j.1541-0420.2005.00439.x

Royle, J. A., & Kéry, M. (2007). A Bayesian state-space formulation of dynamic occupancy models. Ecology, 88(7), 1813–1823. doi: 10.1890/06-0669.1

Royle, J. A., Nichols, J. D., K&eacute, & Ry, M. (2005). Modelling occurrence and abundance of species when detection is imperfect. Oikos, 110, 353–359. doi: 10.1111/j.0030-1299.2005.13534.x